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Views
Single Views
We characterize a view as a set of one or multiple aligned tracks, with at most one two-axis track. In a single view, we cannot visualize multiple scales and foci.
![](/icons/view_single.png)
65 tools
3D Genome Browser
![](/assets/3D_Genome_Browser.jpg)
3dViewer
![](/assets/3dviewer.png)
AliView
![](/assets/aliview.png)
Alvis
![](/assets/alvis.png)
BactoGenie
![](/assets/bactogenie.jpg)
CGView
![](/assets/CGView.png)
CGView Server
![](/assets/cgview_server.png)
Cinteny
![](/assets/Cinteny.png)
Circos
![](/assets/Circos.png)
Civi
![](/assets/Civi.png)
ClicO Free Service
![](/assets/clico.png)
CNVkit
![](/assets/CNV.png)
Combo
![](/assets/Combo.png)
CRISPResso2
![](/assets/crispresso2.png)
Dalliance
![](/assets/dalliance.png)
Deep Motif Dashboard
![](/assets/deepmotifdashboard.png)
DNAPlotter
![](/assets/DNAPlotter.png)
EaSeq
![](/assets/easeq.png)
Edgar Synteny Plots
![](/assets/edgarsyntenymatrix.png)
EpiViz
![](/assets/epiviz.png)
Galaxy HiCExplorer
![](/assets/hicexplorer.png)
GenomeRing
![](/assets/genomering.png)
GenomeView
![](/assets/genomeview.jpeg)
genoPlotR
![](/assets/genoplotr.png)
GenPlay
![](/assets/genplay.png)
Gepard
![](/assets/gepard.png)
ggBio
![](/assets/ggBio.png)
GView
![](/assets/gview.png)
HilbertCurve
![](/assets/HC.png)
HilbertVis
![](/assets/HilbertVis.png)
HUGIn
![](/assets/hugin.png)
IRScope
![](/assets/irscope.jpg)
J-Circos
![](/assets/jcircos.png)
JalView
![](/assets/jalview.png)
JBrowse
![](/assets/jbrowse.png)
JuiceBox
![](/assets/juicebox.png)
Lollipop Plot cBio
![](/assets/Lollipop.png)
MEXPRESS
![](/assets/mexpress.png)
MGcV
![](/assets/mgcv.jpg)
MSAViewer
![](/assets/msaviewer.png)
NCBI Genome Viewer
![](/assets/NCBIGenomeBrowser.png)
pLogo
![](/assets/plogo.png)
PSU 3D Genome Browser
![](/assets/3Dgenomebrowser.jpg)
ReadXplorer
![](/assets/readxplorer.png)
RIdeogram
![](/assets/rideogram.png)
Rondo
![](/assets/Rondo.png)
Sashimi Plot
![](/assets/Sashimi.png)
Sequence Bundles
![](/assets/sequencebundles.png)
Spatial DB
![](/assets/spatialdb.png)
SpliceGrapher
![](/assets/splicegrapher.png)
SplicePlot
![](/assets/spliceplot.png)
SpliceSeq
![](/assets/spliceseq.png)
svist4get
![](/assets/svist4get.png)
SynMap2
![](/assets/synmap2.png)
SynteBase and SynteView
![](/assets/syntebaseview.png)
TFmotifView
![](/assets/tfmotifview.png)
Two Sample Logo
![](/assets/two.png)
UCSC Genome Browser
![](/assets/UCSC_Genome_Viewer.png)
Variant View
![](/assets/variantview.png)
VCF Plotein
![](/assets/vcfplotein.png)
Vials
![](/assets/vials.png)
Vista Dot
![](/assets/vistadot.png)
VistaPoint
![](/assets/vistapoint.png)
WashU Epigenome Browser
![](/assets/washu.png)
WebLogo
![](/assets/Weblogo.png)
Multiple Views
Multiple views allow for visualizations with multiple scales and foci. Multiple views can be (i) independent, (ii) weakly linked, (iii) medium linked or (iv) strongly linked. While independent views are not connected in any way, weakly linked views are linked by brushing and linking. Medium linked views share navigation, for example two views are at different scales, but zooming always affects both. Strongly linked views share genomic coordinates at one axis and can also share tracks that are aligned to the axis.
![](/icons/view_multiple.png)
41 tools
ABrowse
![](/assets/abrowse.png)
Apollo
![](/assets/apollo.png)
BedSect
![](/assets/bedsect.png)
CEpBrowser
![](/assets/cepbrowser.png)
Cooler
![](/assets/cooler.png)
CRAMER
![](/assets/cramer.png)
deepTools Heatmap
![](/assets/deeptools.png)
Edgar Genome Browser
![](/assets/edgargenomebrowser.png)
EnrichedHeatmap
![](/assets/enrichedheatmaps.png)
Ensembl
![](/assets/ensembl.png)
GBrowse
![](/assets/GBrowse.png)
GBrowse_syn
![](/assets/gbrowse_syn.png)
Genome Annotator Light (GAL)
![](/assets/GAL.png)
ggBio
![](/assets/ggBio.png)
GIVE
![](/assets/give.png)
Gremlin
![](/assets/Gremlin.png)
HiGlass
![](/assets/HiGlass.png)
HiPiler
![](/assets/hipiler.png)
IGB
![](/assets/IGB.png)
Integrative Genomics Viewer
![](/assets/IGV.png)
Island Viewer
![](/assets/IslandViewer_example.png)
Juiceboxjs
![](/assets/juiceboxjs.png)
MAGI
![](/assets/magi.png)
MEME
![](/assets/meme.png)
MicroScope
![](/assets/microscope.png)
MizBee
![](/assets/Mizbee.jpg)
MochiView
![](/assets/MochiView.png)
my5c
![](/assets/my5c.png)
NCBI Sequence Viewer
![](/assets/NCBISequenceViewer.png)
ngs.plot
![](/assets/ngsplot.png)
Oviz-Bio
![](/assets/ovizbio.png)
Persephone
![](/assets/persephone.png)
Savant Genome Browser 2
![](/assets/savant.png)
SCGV
![](/assets/scgv.png)
Sequence Surveyor
![](/assets/sequencesurveryor.png)
SilkDB 3.0
![](/assets/silk_db_3.png)
SWAV
![](/assets/swav.png)
Synteny Explorer
![](/assets/syntenyexplorer.png)
trackViewer
![](/assets/trackViewer.png)
Vista Synteny
![](/assets/vistasynteny.png)
Xena
![](/assets/xena.png)